Each pipeline below shows what data goes in, what every step does, and what comes back. Share a pipeline page with a colleague or a core facility to show exactly what a run produces.
5 pipelines available in Horizon today
Quality checks and resource recommendations for any assay: FastQC on every sample, plus chemistry detection, preliminary cell-quality metrics, and strandedness calls for single-cell and bulk RNA-seq.
Input
Raw FASTQ reads
Output
FastQC reports, resource recommendations, and a MultiQC report
Guides and related workflows
Short guides to the workflows we support, useful when deciding what you want from a run.
Talk with our team about building or adapting a workflow for your research, including deployment in your AWS environment.
Contact the team