Bridge Horizon Help Center
Guides, video tutorials, and answers for Bridge Horizon, the platform that runs your analyses with the PipelineEngine (bPE) and visualizes results with apps like SCenic Viewer.
Featured guides
How to read a volcano plot
Understand the axes, significance cutoffs, and colors in a differential expression volcano plot, and what to check before drawing a conclusion.
Read the guidePipelineEngine getting started
From log in to launch: upload FASTQs, pick a speed tier, run a bulk RNA-seq pipeline, and interpret the reports it returns.
Start the guideSCenic Viewer plot descriptions
What each plot type in SCenic Viewer shows, when it is generated, and how to customize it for your single-cell data.
Browse plotsBridge Horizonthe platform
One secure environment for your data, analyses, and results.
PipelineEnginebPE
The compute layer. Runs RNA-seq, differential expression, and pathway pipelines from raw FASTQs to finished results.
App Library
Apps for post-analysis visualization and exploration.
SCenic Viewer
An app in the library. Explore single-cell results with UMAP, violin, feature, heatmap, and dot plots.
PipelineEngine is the product name; bPE stands for Bridge PipelineEngine.
Quick links
The platform
Bridge Horizon
Activate your account, log in, upload data, and open applications from the dashboard.
FAQ
Answers to the most common questions about Bridge Horizon and SCenic Viewer.
Compute: runs your analyses
PipelineEngine
The compute layer of Bridge Horizon. Run bulk RNA-seq, differential expression, and pathway pipelines from FASTQs to results.
App Library: explore your results
SCenic Viewer
An app in the Bridge Horizon App Library. Load a Seurat RDS object and generate UMAP, violin, feature, heatmap, and dot plots.
Ready to go further?
See what the pipelines produce in the sample reports, or read about the RNA-seq analysis and single-cell RNA-seq workflows. Need a walkthrough for your team? Request a demo and we'll set up your workspace.