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    7. SCenic Viewer video tutorials

    SCenic Viewer, an app in the Bridge Horizon App Library for post-analysis visualization

    Questions about SCenic Viewer video tutorials?

    Ask Bridge Advisor. It answers about this article and its sample plot, and nothing else.

    • Help Center
    • Bridge Horizon tutorials
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    • SCenic Viewer tutorials
    • SCenic Viewer videos
    • How to read a volcano plot
    • SCenic Viewer plot descriptions
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    • SCenic Viewer FAQ

    Getting started

    • Bridge Horizon tutorials
    • Bridge Horizon videos
    • SCenic Viewer tutorials
    • SCenic Viewer videos

    Reference

    • How to read a volcano plot
    • SCenic Viewer plot descriptions
    • PipelineEngine

    FAQ

    • Bridge Horizon FAQ
    • SCenic Viewer FAQ

    SCenic Viewer Video Tutorial Library

    Short walkthroughs for every step of SCenic Viewer: launching the app, loading an RDS object, generating UMAP, violin, and feature plots, using the advanced features, and saving your session. Prefer written instructions? Read the text tutorials.

    How to Access SCenic Viewer from Bridge Horizon

    Launch SCenic Viewer from the Bridge Horizon dashboard.

    How to Launch SCenic Viewer

    Open the app from the Apps section of the dashboard.

    How to Load Your RDS Object

    Browse for and load a Seurat RDS object into SCenic Viewer.

    How to Generate a UMAP

    Visualize clusters with a UMAP plot, colored by cluster or annotation.

    How to Generate a Violin Plot

    Compare gene expression distributions across clusters and conditions.

    How to Generate a Feature Plot

    Map the expression of a gene of interest onto the UMAP.

    How to Leverage SCenic Viewer's Advanced Features

    Labels, colors, treatment splits, and other plot customizations.

    How to Save Your Session

    Save and revisit your SCenic Viewer session.

    Keep exploring

    Curious what a plot means once you've made it? Read the plot descriptions, or see the full Bridge Horizon video library for dashboard basics.

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