ProblemProductReportsReviews
    PipelinesPricing
    Log in
    1. Bridge Horizon
    2. Tools
    3. MultiQC

    One report. The whole experiment.

    MultiQC in Bridge Horizon

    MultiQC brings quality checks and pipeline summaries together so your team can compare samples without chasing separate files. See how Bridge Horizon keeps that report beside the run and its results.

    Explore Quality Control

    From reads to review

    Input

    FastQC results and pipeline summaries

    Check

    MultiQC collects metrics across samples

    Review

    A report you can review and share in context

    In your workflow

    A clearer first pass through your results

    A MultiQC report is most useful when it is connected to the analysis that produced it.

    01

    Compare samples side by side

    Look for outliers in read quality and pipeline metrics before drawing conclusions from downstream results.

    02

    Keep the run in view

    Bridge Horizon keeps the report with its files, folders and run history, so reviewers can see where the numbers came from.

    03

    Share context, not a transfer

    Give named collaborators access to the relevant results through a link, with permissions controlled for the project, dataset or report.

    Where MultiQC appears

    Quality Control

    The experiment-level report places resource recommendations and applicable QC tables above the standard FastQC sections.

    Explore pipeline

    Bulk RNA-seq

    Review trimming, alignment and other run metrics alongside the gene counts and transcript estimates.

    Explore pipeline

    Bulk TCR Detection

    Review read quality with repertoire summaries and the full or productive-only result tables.

    Explore pipeline

    Reading the results

    MultiQC summarizes the outputs produced by a workflow; the sections shown depend on which analyses ran. It does not replace reviewing the underlying result files.

    Also see FastQC in Bridge Horizon.

    See it in action

    See a MultiQC report in its run context

    Talk through your assay, sample volume and reporting needs with our team.

    Email the team

    One place to run pipelines, review results, and share data across your whole genomics team.

    A product by Bridge Informatics
    Theme

    Solutions

    By team

    • NGS Providers
    • Bench Scientists

    By workflow

    • Pipelines
    • RNA-seq Analysis
    • Single-cell RNA-seq

    Guides

    • DESeq2 Differential Expression
    • nf-core RNA-seq Pipeline
    • Genomics Data Governance

    Tools

    • MultiQC
    • FastQC

    Product

    • Home
    • The Problem
    • Product Tour
    • Sample Reports
    • Pricing
    • FAQ
    • Help Center
    Create your free accountFree plan · Free trial · Set up in minutes

    © 2026 Bridge Informatics. All rights reserved.

    Sitemap: sitemap.xml ·  robots: robots.txt