Each pipeline below shows what data goes in, what every step does, and what comes back. Share a pipeline page with a colleague or a core facility to show exactly what a run produces.
5 pipelines available in Horizon today
From 10x Genomics reads to an annotated, analysis-ready Seurat object: alignment, QC gating, integration, clustering, automated cell-type labels, and differential expression in one run.
Input
Raw paired-end 10x Genomics FASTQ reads
Output
Annotated Seurat object, H5AD, DGE tables, and reports
Guides and related workflows
Short guides to the workflows we support, useful when deciding what you want from a run.
Talk with our team about building or adapting a workflow for your research, including deployment in your AWS environment.
Contact the team